Pieter de jong, phd
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Recent Publications

Li R, Mignot E, Faraco J, Kadotani H, Catanese JJ, Zhao B, Lin X, Hinton L, Ostrander EA, Patterson DF, de Jong PJ. Construction and characterization of an eightfold redundant dog genomic bacterial artificial chromosome library. Genomics 1999; 15:9-17.

Brand-Arpon V, Rouquie S, Massa H, de Jong, PJ, Ferraz C, Ioannou PA, Demaille JG, Trask BJ, Giorgi D. A genomic region encompassing a cluster of olfactory receptor genes and a myosin light chain kinase (MYLK) gene is duplicated on human chromosome regions 3q13-q21 and 3p13. Genomics 1999; 15:98-110.
Langmann T, Buechler C, Ries S, Schaeffler A, Aslanidis C, Schuierer M, Weiler M, Sandhoff, K, de Jong PJ, Schmitz G. Transcription factors Sp1 and AP-2 mediate induction of acid sphingomyelinase during monocytic differentiation. J. Lipid Res.1999; 40:870-880.

Grewal, PK, van Geel M., Frants RR, de Jong PJ, Hewitt JE. Recent amplification of the human FRG1 gene during primate evolution. Gene 1999; 227:79-88.
Van de Sluis BJ, Breen M, Nanji M, van Wolferen M, de Jong PJ, Binns MM, Pearson PL, Kuipers J, Rothuizen J, Cox DW, Wijmenga, C, Van Oost BA. Genetic mapping of the copper toxicosis locus in Bedlington terriers to dog chromosome 10, in a region syntenic to human chromosome region 2p13-p16. Hum. Mol Genet. 1999; 8:501-507.

Frengen E, Weichenhan D, Zhao B, Osoegawa K, van Geel M, de Jong PJ. A modular, positive selection bacterial artificial chromosome vector with multiple cloning sites. Genomics 1999; 58:250-253.



Brand-Arpon V, Rouquier S, Massa H, de Jong PJ, Ferraz C, Ioannou PA, Demaille JG, Trask BJ, Giorgi D. A genomic region encompassing a cluster of olfactory receptor genes and a myosin light chain kinase (MYLK) gene is duplicated on human chromosome regions 3q13-q21 and 3p13. Genomics. 1999, 56:98-110.
Osoegawa K, Tateno M, Woon PY, Frengen E, Mammoser AG, Catanese JJ, Hayashizaki Y, de Jong PJ. Bacterial artificial chromosome libraries for mouse sequencing and functional analysis. Genome Res. 2000; 10:116-128.

Lin L, Faraco J, Li R, Kadotani H, Rogers W, Lin X, Qiu X, de Jong PJ, Nishino S, Mignot E The sleep disorder canine narcolepsy is caused by a mutation in the hypocretin (orexin) receptor 2 gene. Cell 1999; 98:365-376.

Van Geel M, Heather LJ, Lyle R, Hewitt JE, Frants RR, de Jong PJ. The FSHD region on human chromosome 4q35 contains potential coding regions among pseudogenes and a high density of repeat elements. Genomics. 1999; 61:55-65.

Hoskins RA, Nelson CR, Berman BP, Laverty TR, George RA, Ciesiolka L, Naeemuddin M, Arenson AD, Durbin J, David RG., Tabor PE, Bailey MR, DeShazo DR, Catanese JJ, Mammoser A, Osoegawa K, de Jong PJ, Celniker SE, Gibbs RA, Rubin GM, Scherer SE. A BAC-based physical map of the major autosomes of Drosophila melanogaster. Science 2000; 287:2271-2274.

Frengen, E, Zhao B, Howe S, Weichenhan D, Osoegawa K, Gjernes E, Jessee J, Prydz H, Huxley C, de Jong PJ. Modular bacterial artificial chromosome vectors for transfer of large inserts into mammalian cells. Genomics 2000; 68:118-126.
Warren W, Smith TP, Rexroad CE, Fahrenkrug SC, Allison T, Shu CL, Catanese JJ, de Jong PJ. Construction and characterization of a new bovine bacterial artificial chromosome library with 10 genome-equivalent coverage. Mamm. Genome 2000; 1:662-3.

Wang J, Jani-Sait SN, Escalon EA., Carroll AJ., de Jong PJ., Kirsch IR., Aplan PD. The t(14;21)(q11.2;q22) chromosomal translocation associated with T-cell acute lymphoblastic leukemia activates the BHLHB1 gene. Proc Natl Acad Sci U S A. 2000; 97:3497-3502.



Van Geel M, van Deutekom JC, van Staalduinen A, Lemmers RJ, Dickson MC, Hofker MH, Padberg GW, Hewitt JE, de Jong PJ, Frants RR. Identification of a novel beta-tubulin subfamily with one member (TUBB4Q) located near the telomere of chromosome region 4q35. Cytogenet Cell Genet. 2000; 88:316-21.

Van Schie RC, Marras SA, Conroy JM, Nowak NJ, Catanese JJ, de Jong PJ. Semiautomated clone verification by real-time PCR using molecular beacons. Biotechniques 2000; 29:1296-1300, 1302-1304, 1306.

Cheung VG, Nowak N, Jang W, Kirsch IR, Zhao S, Chen XN, Furey TS, Kim, UJ, Kuo WL, Olivier M, Conroy J, Kasprzyk A, Massa H, Yonescu R, Sait.S, Thoreen C, Snijders A, Lemyre E, Bailey JA, Bruzel A, Burrill WD, Clegg SM, Collins S, Dhami P, Friedman C, Han CS, Herrick S, Lee J, Ligon AH, Lowry S, Morley M, Narasimhan S, Osoegawa K, Peng Z, Plajzer-Frick I, Quade BJ, Scott D, Sirotkin K, Thorpe AA, Gray JW, Hudson J, Pinkel D, Ried T, Rowen L, Shen-Ong GL, Strausberg RL, Birney E, Callen DF, Cheng JF, Cox DR, Doggett NA, Carter NP, Eichler, EE, Haussler D, Korenberg JR, Morton CC, Albertson D, Schuler G, de Jong PJ, Trask BJ .

Integration of cytogenetic landmarks into the draft sequence of the human genome. The BAC Resource Consortium. Nature 2001; 409:953-958.

Bentley DR, Deloukas P, Dunham A, French L, Gregory SG, Humphray SJ, Mungall AJ, Ross MT, Carter NP, Dunham I, Scott CE, Ashcroft KJ, Atkinson AL, Aubin K, Beare DM, Bethel G, Brady N, Brook JC, Burford DC, Burrill WD, Burrows C, Butler AP, Carder C, Catanese JJ, Clee CM, Clegg SM, Cobley V, Coffey AJ, Cole CG, Collins JE, Conquer JS, Cooper RA, Culley KM, Dawson E, Dearden FL, Durbin RM, de Jong PJ, Dhami PD, Earthrowl ME, Edwards CA, Evans RS, Gillson CJ, Ghori J, Green L, Gwilliam R, Halls KS., Hammond S, Harper GL, Heathcott RW, Holden JL, Holloway E, Hopkins BL, Howard PJ, Howell GR, Huckle EJ, Hughes J, Hunt PJ, Hunt SE, Izmajlowicz M, Jones CA, Joseph SS, Laird G, Langford CF, Lehvaslaiho MH, Leversha MA, McCann OT, McDonald LM, McDowall J, Maslen GL, Mistry D, Moschonas NK, Neocleous V, Pearson DM, Phillips KJ, Porter KM, Prathalingam SR, Ramsey YH, Ranby SA, Rice CM, Rogers J, Rogers LJ, Sarafidou T, Scott DJ, Sharp GJ, Shaw-Smith CJ, Smink LJ, Soderlund C, Sotheran EC, Steingruber HE, Sulston JE, Taylor A, Taylor RG, Thorpe AA, Tinsley E, Warry GL, Whittaker A, Whittaker P, Williams SH., Wilmer TE., Wooster R, Wright CL The physical maps for sequencing human chromosomes 1, 6, 9, 10, 13, 20 and X. Nature 2001; 409:942-943.
McPherson JD, Marra M, Hillier L, Waterston RH, Chinwalla A, Wallis J, Sekhon M, Wylie K, Mardis ER, Wilson RK, Fulton R, Kucaba TA, Wagner-McPherson C, Barbazuk WB, Gregory SG, Humphray SJ, French L, Evans RS, Bethel G, Whittaker A, Holden JL, McCann OT., Dunham A, Soderlund C, Scott CE, Bentley DR, Schuler G, Chen HC, Jang W, Green, ED, Idol JR, Maduro VV, Montgomery KT, Lee E, Miller A, Emerling S, Kucherlapati R, Gibbs R, Scherer S, Gorrell JH, Sodergren E, Clerc-Blankenburg K, Tabor P, Naylor S, Garcia D, de Jong PJ, Catanese JJ, Nowak N, Osoegawa K, Qin S, Rowen L, Madan A, Dors M, Hood L, Trask B, Friedman C, Massa H, Cheung VG, Kirsch IR, Reid T, Yonescu R, Weissenbach J, Bruls T, Heilig R, Branscomb E, Olsen A, Doggett N, Cheng JF, Hawkins T, Myers RM, Shang J, Ramirez L, Schmutz J, Velasquez O, Dixon K., Stone, NE, Cox, DR, Haussler D, Kent WJ, FureyT, Rogic S., Kennedy S., Jones S, Rosenthal A, Wen G, Schilhabel M, Gloeckner G, Nyakatura G, Siebert R, Schlegelberger B, Korenberg J, Chen XN, Fujiyama A, Hattori M, Toyoda A, Yada T, Park HS, Sakaki Y, Shimizu N, Asakawa S, Kawasaki K, Sasaki T, Shintani A, Shimizu A, Shibuya K, Kudoh J, Minoshima S, Ramser J, Seranski P, Hoff C, Poustka A, Reinhardt R, Lehrach H. A physical map of the human genome. Nature 2001, 409:934-941.



Bejaoui K, Wu C, Scheffler MD, Haan G, Ashby P, Wu L, de Jong PJ, Brown RH. SPTLC1 is mutated in hereditary sensory neuropathy, type 1. Nature Genet. 2001; 27:261-262.

Osoegawa, K, Mammoser, AG, Wu, C, Frengen, E, Zeng C, Catanese JJ de Jong PJ. A bacterial artificial chromosome library for sequencing the complete human genome. Genome Res. 2001; 11:483-496.

Fahrenkrug SC, Rohrer GA, Freking BA, Smith TP, Osoegawa K, Shu CL, Catanese JJ, de Jong PJ. A porcine BAC library with tenfold genome coverage: a resource for physical and genetic map integration. Mamm Genome 2001; 12:472-474.

Zeng C, Kouprina N, Zhu B, Wang Y, Hoek M, Cross G, Osoegawa K, Larinov V, de Jong PJ. Large-insert BAC/YAC shuttle libraries for selective re-isolation of genomic regions by homologous recombination in yeast. Genomics 2001; 77: 27-34.

Bachmanov, AA., Li, X., Reed, DR., Li, S, Chen, Z, Tordoff MG, Beauchamp GK, de Jong PJ, Wu C, West D, Chatterjee A, Ross DA, Ohmen JD. Positional cloning of the mouse saccharin preference (Sac) locus. Chemical Senses 2001; 26:925-33.

Weichenhan D, Kunze B, Winking H, van Geel M, Osoegawa K, de Jong PJ, Traut W. Source and component genes of a 6-200 Mb gene cluster in the house mouse. Mamm Genome. 2001 Aug;12:590-4.

Li X, Bachmanov AA, Li S, Chen Z, Tordoff MG, Beauchamp GK, de Jong PJ, Wu C, Chen L, West DB, Ross DA, Ohmen JD, Reed DR. Genetic, physical, and comparative map of the subtelomeric region of mouse Chromosome 4. Mamm Genome. 2002 Jan;13:5-19

Qu X, Morozova I, Chien M, Kalachikov S, Segal G, Chen J, Park H, Georghiou A, Asamani G, Feder M, Rineer J., Greenberg JJ, Goldsberry C, Rzhetsky A, Fischer SG, De Jong PJ, Zhang P, Cayanis E, Shuman HA, Russo JJ (2001) The Legionella pneumophila sequencing project. Invited chapter in "Legionella: Proceedings of the 5th International Symposium" ASM Press.

Van Geel M, Eichler EE, Beck AF, Shan Z, Haaf T, Van der Maarel SM, Frants RR, De Jong PJ. A cascade of complex subtelomeric duplications during the evolution of the homonodi and old world monkey genomes. Am.J.Hum.Genet. 2002; 70: 269-78.
Bodnar JS, Chatterjee A, Castellani LW, Ross DA, Ohmen J, Cavalcoli J, Wu C, Dains KM, Catanese J, Chu M, Sheth SS, Charugundla K, Demant P, West DB, de Jong P, Lusis AJ. Positional cloning of the combined hyperlipidemia gene Hyplip1. Nat Genet 2002; 30:110-6.

Fujiyama A, Watanabe H, Toyoda A, Taylor TD, Itoh T, Tsai SF, Park HS, Yaspo ML, Lehrach H, Chen Z, Fu G, Saitou N, Osoegawa K, de Jong PJ, Suto Y, Hattori M, Sakaki Y. Construction and analysis of a human-chimpanzee comparative clone map. Science 2002; 295:131-4.

 

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