Email: tyamamoto@chori.org
Phone: 510-450-7645
Fax: 510-450-7910

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Publications

1. Yamamoto T and Ryan RO. Domain swapping reveals LDL type A repeat order affects ligand binding to the low-density lipoprotein receptor. J Biol Chem: (in press 2009).

2. Hauser PS, Raussens V, Yamamoto T, Abdullahi GE, Weers PM, Sykes BD, Ryan RO. Semisynthesis and segmental isotope labeling of apoE3 N-terminal domain using expressed protein ligation. J Lipid Res: (in press 2008).

3. Yamamoto T, Chen HC, Guigard E, Kay CM, Ryan RO. Molecular studies of pH-dependent ligand interactions with the low-density lipoprotein receptor. Biochemistry: 47, 11647-11652 (2008).

4. Yamamoto T, Choi HW and Ryan RO. Apolipoprotein E isoform-specific binding to the low-density lipoprotein receptor. Anal Biochem: 372, 222-226 (2008).

5. Yamamoto T and Ryan RO. Anionic phospholipids inhibit apolipoprotein E-Low-density lipoprotein receptor interactions. Biochem Biophys Res Commun: 354, 820-824 (2007).

6. Gupta V, Narayanaswami V, Budamagunta MS, Yamamato T, Voss JC and Ryan RO, Lipid-induced extension of apolipoprotein E helix 4 correlates with low density lipoprotein receptor binding ability. J Biol Chem: 281, 39294-39299 (2006).

7. Yamamoto T, and Ryan RO. Role of leucine zipper motif in apoE3 N-terminal domain lipid binding activity. Biochim Biophys Acta: 1761, 1100-1106 (2006).

8. Yamamoto T, Lamoureux J and Ryan RO. Characterization of low-density lipoprotein receptor ligand interactions by fluorescence resonance energy transfer. J Lipid Res: 47,1091-1096 (2006).

9. Ishibashi T, Isogai M, Kiyohara H, Hosaka M, Chiku H, Koga A, Yamamoto T, Uchiyama Y, Mori Y, Hashimoto J, Ausio J, Kimura S, and Sakaguchi K. Higher plant RecA-like protein is homologous to RadA. DNA Repair (Amst): 5, 80-88 (2006).

10. Yamamoto T, Mori Y, Ishibashi T, Uchiyama Y, Ueda T, Ando T, Hashimoto J, Kimura S and
Sakaguchi K. Interaction between proliferating cell nuclear antigen (PCNA) and a DnaJ induced by DNA damage. J Plant Research: 118, 91-97 (2005).

11. Kimura S, Ishibashi T, Yamamoto T and Sakaguchi K. DNA repair in higher plants. Seikagaku: 77, 113-123 (2005).

12. Mori Y, Yamamoto T, Ishibashi T, Uchiyama Y, Kimura S and Sakaguchi K. Characterization of the Origin Recognition Complex (ORC) from higher plant, rice (Oryza sativa). Gene: 353, 23-30 (2005).

13. Ishibashi T, Koga A, Yamamoto T, Uchiyama Y, Mori Y, Hashimoto J, Kimura S, and Sakaguchi K. Two types of replication protein A in seed plants. FEBS J: 272, 3270-3281 (2005).

14. Mori Y, Kimura S, Saotome A, Kasai N, Sakaguchi N, Uchiyama Y, Ishibashi T, Yamamoto T, Chiku H, and Sakaguchi K. Plastid DNA polymerases from higher plants, Arabidopsis thaliana. Biochem Biophys Res Commun: 334, 43-50 (2005).

15. Uchiyama Y, Kimura S, Yamamoto T, Ishibashi T and Sakaguchi K. Plant DNA polymerase λ, a DNA repair enzyme which functions in plant meristematic and meiotic tissues. Eur J Biochem: 271, 2799-2807 (2004).

16. Sharma A, Isogai M, Yamamoto T, Sakaguchi K, Hashimoto J and Komatsu S. A novel interaction between calreticulin and ubiquitin-like nuclear protein in rice. Plant Cell Physiol: 45, 684692 (2004).

17. Yamakoshi J, Sato T, Matsuura K, Yamamoto T, Obata A, Saito M, Matsuyama A and Kikuchi M. Safety evaluation of flavonoids-containing tomato skin extract. Oyo Yakuri/Pharmacometrics: 67, 313-321 (2004).

18. Yamamoto T, Kimura S, Mori Y, Oka M, Ishibashi T, Yanagawa Y, Nara T, Nakagawa H, Hashimoto J and Sakaguchi K. Degradation of proliferating cell nuclear antigen by 26S proteasome in rice ( Oryza sativa L.). Planta: 218, 640-646 (2004).

19. Yamamoto T, Mori Y, Ishibashi T, Uchiyama Y, Sakaguchi N, Furukawa T, Hashimoto J, Kimura S and Sakaguchi K. Characterization of Rad6 from a higher plant, rice (Oryza sativa L.) and its interaction with Sgt1, a subunit of the SCF ubiquitin ligase complex. Biochem Biophys Res Commun: 314, 434-439 (2004).

20. Yamamoto T, Yoshimura M, Yamaguchi F, Kouchi T, Tsuji R, Saito M, Obata A and Kikuchi M. Anti-allergic activity of naringenin chalcone from tomato skin extracts. Biosci Biotechnol Biochem: 68, 1706-1711 (2004).

21. Takenaka Y, Nakamura F, Yamamoto T. and Yoshikawa M. Enterostatin (VPDPR) and its peptide fragment DPR reduce serum cholesterol levels after oral administration in mice. Biosci Biotechnol Biochem: 67, 1620-1622 (2003).

22. Ishibashi T, Kimura S, Yamamoto T, Furukawa T, Takata K, Uchiyama Y, Hashimoto J and Sakaguchi K. Rice UV-damaged DNA binding protein homologues are most abundant in proliferating tissues. Gene: 308, 79-87 (2003).

23. Yamamoto T, Kimura S, Mori Y, Uchiyama Y, Ishibashi T, Hashimoto J and Sakaguchi K. Interaction between proliferating cell nuclear antigen and JUN-activation-domain-binding protein 1 in the meristem of rice, Oryza sativa L. Planta: 217, 175-183 (2003).

24. Kimura S, Uchiyama Y, Kasai N, Namekawa S, Saotome A, Ueda T, Ando T, Ishibashi T, Oshige M, Furukawa T, Yamamoto T, Hashimoto J and Sakaguchi K. A novel DNA polymerase homologous to Escherichia coli DNA polymerase I from a higher plant, rice (Oryza sativa L.). Nucleic Acids Res: 30, 1585-1592 (2002).

25. Matsui M, Kiyozumi Y, Yamamoto T, Mizushina Y, Mizukami F and Sakaguchi K. Selective adsorption of biopolymers on zeolites. Chemistry: 7, 1555-1560 (2001).

26. Kimura S, Suzuki T, Yanagawa Y, Yamamoto T, Nakagawa H, Tanaka I, Hashimoto J and Sakaguchi K. Characterization of plant proliferating cell nuclear antigen (PCNA) and flap endonuclease-1 (FEN-1), and their distribution in mitotic and meiotic cell cycles. Plant J: 28, 643-653 (2001).

27. Nara T, Yamamoto T and Sakaguchi K. Characterization of interaction of C- and N-terminal domains in LIM15/DMC1 and RAD51 from a basidiomycetes, Coprinus cinereus. Biochem Biophys Res Commun: 275, 97-102 (2000).

28. Yoshikawa M, Fujita H, Matoba N, Takenaka Y, Yamamoto T, Yamauchi R, Tsuruki T and Takahata K. Bioactive peptides derived from food proteins preventing lifestyle-related diseases. BioFactors: 12, 143-146 (2000).

 

 

revised: Friday, March 27, 2009 2:45 PM

 

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